PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00113.1.g00680.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 311aa    MW: 33447.3 Da    PI: 5.5391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00113.1.g00680.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20135186256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g+++AeIrdp+++g   r++lg+++t+ eAa+a+++a+ +++g+
  Zpz_sc00113.1.g00680.1.am.mk 135 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 186
                                   8********.***********8876..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32134194IPR001471AP2/ERF domain
PROSITE profilePS5103224.078135193IPR001471AP2/ERF domain
CDDcd000183.89E-32135194No hitNo description
SMARTSM003803.6E-39135199IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22135194IPR016177DNA-binding domain
PfamPF008471.9E-14135185IPR001471AP2/ERF domain
PRINTSPR003671.5E-13136147IPR001471AP2/ERF domain
PRINTSPR003671.5E-13175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDFSGEIDDF WLQNICEQFH DGEACLPVPE VYSASSTVAH PIPAPQHDFQ YAVFMPQQQV  60
ALVDLTQGYG DATAAAALSA KPAAPLIIQF GGEPSPRPSL TISLPPTTHV WGADVAPLPV  120
HSAAAASVDV EDLRKYRGVR QRPWGKYAAE IRDPKKRGSR VWLGTYDTPV EAARAYDRAA  180
FRMRGAKAIL NFPNEVGSGG ADFLTPQQPA SRSHSSKRKL HDAHQPDDVE AETAAKSIKT  240
EAFTSPASSQ TSLSPATTMA STVTSSSSSE AEMFPISPSG WSWEQFESVF GSLSPLSPHP  300
GHMGFPEVTV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-28134199469ATERF1
2gcc_A6e-28134199469ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076624e-64AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0046764e-64AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0050064e-64AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149584e-64AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3393784e-64AY339378.1 Oryza sativa (japonica cultivar-group) Ap25 mRNA, complete cds.
GenBankCP0126104e-64CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170666.11e-105putative AP2/EREBP transcription factor superfamily protein
TrEMBLC4IZQ91e-105C4IZQ9_MAIZE; Uncharacterized protein
STRINGGRMZM2G057386_P011e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-37ethylene responsive element binding factor 5